Protocol for Epistasis Detection with Machine Learning using Genepi Package
Published in Humana, New York, NY, 2021
Recommended citation: Petinrin, O. O., & Wong, K. C. (2021). "Protocol for epistasis detection with machine learning using genepi package". In Epistasis (pp. 291-305). Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0947-7_18
This protocol chapter shows the usage of GenEpi with example data. The package uses a three-step procedure to reduce dimensionality, select the within-gene epistasis, and select the cross-gene epistasis. The package also provides a medium to build prediction models with the combination of genetic features and environmental influences.
Recommended citation: Petinrin, O. O., & Wong, K. C. (2021). “Protocol for epistasis detection with machine learning using genepi package”. In Epistasis (pp. 291-305). Humana, New York, NY.